sesame - SEnsible Step-wise Analysis of DNA MEthylation BeadChips
Tools For analyzing Illumina Infinium DNA methylation arrays. SeSAMe provides utilities to support analyses of multiple generations of Infinium DNA methylation BeadChips, including preprocessing, quality control, visualization and inference. SeSAMe features accurate detection calling, intelligent inference of ethnicity, sex and advanced quality control routines.
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dnamethylationmethylationarraypreprocessingqualitycontrolbioinformaticsdna-methylationmicroarray
10.57 score 82 stars 1 dependents 389 scriptswheatmap - Incrementally Build Complex Plots using Natural Semantics
Builds complex plots, heatmaps in particular, using natural semantics. Bigger plots can be assembled using directives such as 'LeftOf', 'RightOf', 'TopOf', and 'Beneath' and more. Other features include clustering, dendrograms and integration with 'ggplot2' generated grid objects. This package is particularly designed for bioinformaticians to assemble complex plots for publication.
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7.19 score 10 stars 3 dependents 57 scripts 2.0k downloads